Commit 009d3d2e authored by Kevin Kunzmann's avatar Kevin Kunzmann

Update README.md

parent e738e819
...@@ -86,7 +86,8 @@ for reference. ...@@ -86,7 +86,8 @@ for reference.
### Cluster execution ### Cluster execution
1. Same as the first step in 'Local execution'. 1. Same as the first step in 'Local execution', also make sure to checkout the
correct tag/commit.
2. Make sure that `Python 3` is available and `snakemake` installed 2. Make sure that `Python 3` is available and `snakemake` installed
(e.g. load Python via modules and install snakemake into a virtual environment) (e.g. load Python via modules and install snakemake into a virtual environment)
3. Configure snakemake for your execution environment and store the profile in, 3. Configure snakemake for your execution environment and store the profile in,
...@@ -104,7 +105,7 @@ for reference. ...@@ -104,7 +105,7 @@ for reference.
5. Adjust tissues, data date, and target cohort in `config/parameters.yaml` 5. Adjust tissues, data date, and target cohort in `config/parameters.yaml`
6. Run the distributed pipeline 6. Run the distributed pipeline
``` ```
snakemake --profile config/snakemake/my-cluster all snakemake --profile config/my-cluster all
``` ```
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