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impute-gene-expression
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Kevin Kunzmann
impute-gene-expression
Commits
009d3d2e
Commit
009d3d2e
authored
Mar 14, 2020
by
Kevin Kunzmann
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@@ -86,7 +86,8 @@ for reference.
### Cluster execution
1.
Same as the first step in 'Local execution'.
1.
Same as the first step in 'Local execution', also make sure to checkout the
correct tag/commit.
2.
Make sure that
`Python 3`
is available and
`snakemake`
installed
(e.g. load Python via modules and install snakemake into a virtual environment)
3.
Configure snakemake for your execution environment and store the profile in,
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@@ -104,7 +105,7 @@ for reference.
5.
Adjust tissues, data date, and target cohort in
`config/parameters.yaml`
6.
Run the distributed pipeline
```
snakemake --profile config/
snakemake/
my-cluster all
snakemake --profile config/my-cluster all
```
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