Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Support
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
impute-gene-expression
Project overview
Project overview
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Boards
Labels
Milestones
Merge Requests
0
Merge Requests
0
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Commits
Issue Boards
Open sidebar
Kevin Kunzmann
impute-gene-expression
Commits
009d3d2e
Commit
009d3d2e
authored
Mar 14, 2020
by
Kevin Kunzmann
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Update README.md
parent
e738e819
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
3 additions
and
2 deletions
+3
-2
README.md
README.md
+3
-2
No files found.
README.md
View file @
009d3d2e
...
@@ -86,7 +86,8 @@ for reference.
...
@@ -86,7 +86,8 @@ for reference.
### Cluster execution
### Cluster execution
1.
Same as the first step in 'Local execution'.
1.
Same as the first step in 'Local execution', also make sure to checkout the
correct tag/commit.
2.
Make sure that
`Python 3`
is available and
`snakemake`
installed
2.
Make sure that
`Python 3`
is available and
`snakemake`
installed
(e.g. load Python via modules and install snakemake into a virtual environment)
(e.g. load Python via modules and install snakemake into a virtual environment)
3.
Configure snakemake for your execution environment and store the profile in,
3.
Configure snakemake for your execution environment and store the profile in,
...
@@ -104,7 +105,7 @@ for reference.
...
@@ -104,7 +105,7 @@ for reference.
5.
Adjust tissues, data date, and target cohort in
`config/parameters.yaml`
5.
Adjust tissues, data date, and target cohort in
`config/parameters.yaml`
6.
Run the distributed pipeline
6.
Run the distributed pipeline
```
```
snakemake --profile config/
snakemake/
my-cluster all
snakemake --profile config/my-cluster all
```
```
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment