Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Support
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
impute-gene-expression
Project overview
Project overview
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Boards
Labels
Milestones
Merge Requests
0
Merge Requests
0
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Commits
Issue Boards
Open sidebar
Kevin Kunzmann
impute-gene-expression
Commits
68b9e642
Commit
68b9e642
authored
Oct 16, 2019
by
Kevin Kunzmann
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
added gitignore and limited concurrent jobs on hpc
parent
aeec8e69
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
7 additions
and
1 deletion
+7
-1
.gitignore
.gitignore
+6
-0
scripts/slurm-snakemake.sh
scripts/slurm-snakemake.sh
+1
-1
No files found.
.gitignore
0 → 100644
View file @
68b9e642
.config
.snakemake
output
logs
nohup.out
container.sif
scripts/slurm-snakemake.sh
View file @
68b9e642
mkdir
-p
logs
mkdir
-p
logs
nohup
snakemake
$1
\
nohup
snakemake
$1
\
--jobs
99
\
--jobs
12
\
--use-singularity
\
--use-singularity
\
--cluster-config
cluster.json
\
--cluster-config
cluster.json
\
--cluster
"sbatch -A {cluster.account} -p {cluster.partition} --ntasks {cluster.ntasks} --cpus-per-task {cluster.ncpu} --nodes {cluster.nodes} -t {cluster.time} --job-name {cluster.name} --output {cluster.output} --error {cluster.error}"
&
--cluster
"sbatch -A {cluster.account} -p {cluster.partition} --ntasks {cluster.ntasks} --cpus-per-task {cluster.ncpu} --nodes {cluster.nodes} -t {cluster.time} --job-name {cluster.name} --output {cluster.output} --error {cluster.error}"
&
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment