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impute-gene-expression
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Kevin Kunzmann
impute-gene-expression
Commits
2134777a
Commit
2134777a
authored
Nov 10, 2020
by
Kevin Kunzmann
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updated container version and added artery/blood/lymphocytes
parent
0cb96d5d
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config/parameters.yml
config/parameters.yml
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Snakefile
View file @
2134777a
# define the singularity (https://sylabs.io/) container image to use
# define the singularity (https://sylabs.io/) container image to use
# see also https://cloud.sylabs.io/library/kkmann/default/center-grex-imputation#
# see also https://cloud.sylabs.io/library/kkmann/default/center-grex-imputation#
singularity: "library://kkmann/default/center-grex-imputation:sha256.
321833b357b20feda51877dcef6e9bac2dfa706e9ed6c32da39baaa8ead9e1f7
"
singularity: "library://kkmann/default/center-grex-imputation:sha256.
240a821a4cdc6cb013035dc0c4c72ea714299269ed6ca4a6f8f1862b19cd312c
"
# modify this file to define global parameters
# modify this file to define global parameters
# (e.g. set of tissues to impute genetically regulated expression levels for)
# (e.g. set of tissues to impute genetically regulated expression levels for)
...
...
config/parameters.yml
View file @
2134777a
...
@@ -13,6 +13,11 @@ tissues:
...
@@ -13,6 +13,11 @@ tissues:
-
'
Brain_Nucleus_accumbens_basal_ganglia'
-
'
Brain_Nucleus_accumbens_basal_ganglia'
-
'
Brain_Putamen_basal_ganglia'
-
'
Brain_Putamen_basal_ganglia'
-
'
Brain_Substantia_nigra'
-
'
Brain_Substantia_nigra'
-
'
Artery_Aorta'
-
'
Artery_Coronary'
-
'
Artery_Tibial'
-
'
Cells_EBV-transformed_lymphocytes'
-
'
Whole_Blood'
data_date
:
"
20200306"
data_date
:
"
20200306"
...
...
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