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impute-gene-expression
impute-gene-expression
Commit 1c1a6672 authored by Kevin Kunzmann's avatar Kevin Kunzmann
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Update Snakefile

parent a5968cee
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Snakefile
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...@@ -30,7 +30,7 @@ rule download_imputed_genotype_chromosome: ...@@ -30,7 +30,7 @@ rule download_imputed_genotype_chromosome:
shell: shell:
""" """
mkdir -p output/imputed-genotypes mkdir -p output/imputed-genotypes
gsutil cp gs://fimm-horizon-outgoing-data/CENTER_TBI_data_freeze_191014/Imputed_data/CENTER.TBI_imputed_N3741_hg19_HRC_MAC1_freeze_191014_chr1.vcf.gz \ gsutil cp gs://fimm-horizon-outgoing-data/CENTER_TBI_data_freeze_191014/Imputed_data/CENTER.TBI_imputed_N3741_hg19_HRC_MAC1_freeze_191014_chr{wildcards.i}.vcf.gz \
output/imputed-genotypes/CENTER_TBI_imputed_genotype_chr{wildcards.i}.vcf.gz output/imputed-genotypes/CENTER_TBI_imputed_genotype_chr{wildcards.i}.vcf.gz
""" """
......
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