Update Snakefile

1c1a6672 · Kevin Kunzmann · a5968cee · 1c1a6672
Commit 1c1a6672 authored Oct 16, 2019 by Kevin Kunzmann
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Snakefile Snakefile +1 -1

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--- a/Snakefile
+++ b/Snakefile
@@ -30,7 +30,7 @@ rule download_imputed_genotype_chromosome:
    shell:
        """
        mkdir -p output/imputed-genotypes
-        gsutil cp gs://fimm-horizon-outgoing-data/CENTER_TBI_data_freeze_191014/Imputed_data/CENTER.TBI_imputed_N3741_hg19_HRC_MAC1_freeze_191014_chr1.vcf.gz \
+        gsutil cp gs://fimm-horizon-outgoing-data/CENTER_TBI_data_freeze_191014/Imputed_data/CENTER.TBI_imputed_N3741_hg19_HRC_MAC1_freeze_191014_chr{wildcards.i}.vcf.gz \
            output/imputed-genotypes/CENTER_TBI_imputed_genotype_chr{wildcards.i}.vcf.gz
        """