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README.md

@@ -61,7 +61,11 @@ the cross-validated model comparison may take several days (3+) to complete.
 Cluster execution requires slightly more 
 [configuration](https://github.com/kkmann/center-6mo-gose-imputation/blob/master/cluster.json)
 and assumes existence of a slurm cluster.
-Simply modify the `cluster.json` accordingly and execute
+Data should be downloaded on the input node:
+```bash
+./singularity download_data_v1_1
+```
+Then, simply modify the `cluster.json` accordingly and execute
 ```bash
 ./singularity_slurm manuscript_v1_1
 ./singularity_slurm impute_msm_v1_1

Snakefile

@@ -16,6 +16,13 @@ rule download_data:
         bash scripts/download_{wildcards.version}.sh
         """
 
+rule download_data_v1_1:
+    input:
+        "data/v1.1/df_baseline.rds",
+        "data/v1.1/df_ctmri.rds",
+        "data/v1.1/df_imaging.rds",
+        "data/v1.1/df_labs.rds",
+        "data/v1.1/df_gose.rds"
 
 
 rule prepare_data: