Update README.md

README.md

@@ -71,13 +71,10 @@ execution is recommended for speed (cf. below).
 Given that singularity is installed and the container.sif file is present in
 the repository root, simply invoke
 ```bash
-singularity exec container.sif snakemake create_manuscript_v1_1
-singularity exec container.sif snakemake impute_population_wide_msm_v1_1
+singularity exec container.sif manuscript_figures
 ```
 The first command creates all files necessary to compile the cross-validated
-analysis of imputation performance (output/v1.1/manuscript.docx);
-the second one only computes the final imputations for the entire study 
-population (output/v1.1/data/imputation/msm).
+analysis of imputation performance.
 Depending on the number of cores and available RAM, 
 the cross-validated model comparison may take several days (3+) to complete.
 
@@ -95,6 +92,5 @@ singularity exec container.sif snakemake generate_folds_v1_1
 Then, simply modify the `cluster.json` accordingly, make sure that 
 snakemake is installed and execute
 ```bash
-./snakemake_on_slurm_cluster create_manuscript_v1_1
-./snakemake_on_slurm_cluster impute_population_wide_msm_v1_1
+./snakemake_on_slurm_cluster manuscript_figures
 ```