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GOSe-6mo-imputation-paper
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Kevin Kunzmann
GOSe-6mo-imputation-paper
Commits
ae28847d
Commit
ae28847d
authored
Feb 05, 2019
by
Kevin
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added dockerfile an build script
parent
852ea77c
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docker/build
docker/build
+8
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docker/dockerfile
docker/dockerfile
+25
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docker/build
0 → 100755
View file @
ae28847d
#!/bin/bash
USERNAME
=
"kkmann"
IMAGE
=
"gose-6mo-imputation"
BUILDNAME
=
$USERNAME
/
$IMAGE
docker build
--no-cache
-t
$BUILDNAME
.
docker push
$BUILDNAME
\ No newline at end of file
docker/dockerfile
0 → 100644
View file @
ae28847d
FROM
rocker/verse:latest
MAINTAINER
Kevin Kunzmann kevin.kunzmann@mrc-bsu.cam.ac.uk
# update apt
RUN
sudo
apt-get update
# install prerequisits
RUN
sudo
apt-get
-y
install
libcurl4-openssl-dev
# install required R packages
RUN
R
-e
"install.packages('rstan')"
RUN
R
-e
"install.packages('brms')"
RUN
R
-e
"install.packages('mice')"
RUN
R
-e
"install.packages('ggalluvial')"
RUN
R
-e
"install.packages('caret')"
RUN
R
-e
"install.packages('msm')"
RUN
R
-e
"install.packages('opal', repos=c('https://cran.rstudio.com/', 'https://cran.obiba.org'), dependencies=TRUE)"
RUN
R
-e
"devtools::install_github('kkmann/centertbi')"
RUN
R
-e
"devtools::install_github('kkmann/reportr')"
RUN
R
-e
"devtools::install_github('kkmann/describr')"
# install missing tex packages for fancy report
RUN
tlmgr update
--self
RUN
tlmgr
install
koma-script psnfss enumitem xcolor lastpage float placeins beamer translator
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