fixed quoting issue

802ee7e1 · Kevin · b5687df2 · 802ee7e1
Commit 802ee7e1 authored Feb 07, 2019 by Kevin
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Snakefile Snakefile +1 -1

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--- a/Snakefile
+++ b/Snakefile
@@ -210,7 +210,7 @@ rule imputation_report:
    shell:
        """
        mkdir -p output/{wildcards.version}
-        Rscript -e "rmarkdown::render(\\"{input.markdown}\\", output_dir = \\"output/{wildcards.version}\\", params = list(data_dir = \\"../output/{wildcards.version}/data\\", imputations = "../output/v1.1/data/imputation/{wildcards.model}/df_gose_imputed.csv"))"
+        Rscript -e "rmarkdown::render(\\"{input.markdown}\\", output_dir = \\"output/{wildcards.version}\\", params = list(data_dir = \\"../output/{wildcards.version}/data\\", imputations = \\"../output/v1.1/data/imputation/{wildcards.model}/df_gose_imputed.csv\\"))"
        mv reports/figures.zip {output.figures}
        """