added run scripts

25034182 · Kevin · 6b7c71a1 · 25034182 · 25034182
Commit 25034182 authored Feb 02, 2019 by Kevin
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snakemake snakemake +3 -0

snakemake_slurm snakemake_slurm +3 -0

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--- a/snakemake
+++ b/snakemake
+#!/bin/bash
+ncpus=$(getconf _NPROCESSORS_ONLN)
+snakemake $1 --use-singularity -j $ncpus
--- a/snakemake_slurm
+++ b/snakemake_slurm
+#!/bin/bash
+# single input: snakemake target
+nohup snakemake $1 --use-singularity -j 99 --cluster-config cluster.json --cluster "sbatch -A {cluster.account} -p {cluster.partition} -n {cluster.n} -c {cluster.ncpu} -t {cluster.time}"