Update README.md

README.md

@@ -47,8 +47,8 @@ export NEUROBOT_API=[my-neurobot-api-key]
 The workflow can be executed on a potent desktop machine although a cluster
 execution is recommended (cf. blow).
 ```bash
-./singularity manuscript_v1_1
-./singularity impute_msm_v1_1
+./snakemake manuscript_v1_1
+./snakemake impute_msm_v1_1
 ```
 
 All output is written to `output/`.
@@ -62,10 +62,10 @@ Cluster execution requires a cluster-specific [configuration](https://github.com
 The `singularity_slurm` script assumes existence of a slurm cluster.
 Data should be downloaded on the login node:
 ```bash
-./singularity download_data_v1_1
+./snakemake download_data_v1_1
 ```
 Then, simply modify the `cluster.json` accordingly and execute
 ```bash
-./singularity_slurm manuscript_v1_1
-./singularity_slurm impute_msm_v1_1
+./snakemake_slurm manuscript_v1_1
+./snakemake_slurm impute_msm_v1_1
 ```