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Kevin Kunzmann
GOSe-6mo-imputation
Commits
4e532f72
Commit
4e532f72
authored
Apr 18, 2019
by
Kevin
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Merge branch 'master' of
https://git.center-tbi.eu/kunzmann/gose-6mo-imputation-production
parents
c1840dfc
95603a18
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4e532f72
...
@@ -9,7 +9,7 @@ container with the required dependencies is awailable at [zenodo.org](https://ze
...
@@ -9,7 +9,7 @@ container with the required dependencies is awailable at [zenodo.org](https://ze
Singularity >= 2.6.0 is required to run the code in a container, alternatively
Singularity >= 2.6.0 is required to run the code in a container, alternatively
the dependencies can be installed manually (check the
`container-recipe`
file).
the dependencies can be installed manually (check the
`container-recipe`
file).
To get starte
t
, download the code and
`cd`
in the repository folder
To get starte
d
, download the code and
`cd`
in the repository folder
```
bash
```
bash
git clone https://git.center-tbi.eu/kunzmann/gose-6mo-imputation-production.git
git clone https://git.center-tbi.eu/kunzmann/gose-6mo-imputation-production.git
cd
gose-6mo-imputation-production
cd
gose-6mo-imputation-production
...
@@ -21,7 +21,7 @@ provided script
...
@@ -21,7 +21,7 @@ provided script
```
```
This will download the
`container.sif`
file (~1Gb) in the current working
This will download the
`container.sif`
file (~1Gb) in the current working
directory.
directory.
An automated download script via the Neurobot-API is provided but require
An automated download script via the Neurobot-API is provided but require
s
that the Neurobot username and API token are available as environment variables
that the Neurobot username and API token are available as environment variables
```
bash
```
bash
export
NEUROBOT_USR
=[
your-neurobot-username]
export
NEUROBOT_USR
=[
your-neurobot-username]
...
...
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