Commit 4e532f72 authored by Kevin's avatar Kevin
parents c1840dfc 95603a18
...@@ -9,7 +9,7 @@ container with the required dependencies is awailable at [zenodo.org](https://ze ...@@ -9,7 +9,7 @@ container with the required dependencies is awailable at [zenodo.org](https://ze
Singularity >= 2.6.0 is required to run the code in a container, alternatively Singularity >= 2.6.0 is required to run the code in a container, alternatively
the dependencies can be installed manually (check the `container-recipe` file). the dependencies can be installed manually (check the `container-recipe` file).
To get startet, download the code and `cd` in the repository folder To get started, download the code and `cd` in the repository folder
```bash ```bash
git clone https://git.center-tbi.eu/kunzmann/gose-6mo-imputation-production.git git clone https://git.center-tbi.eu/kunzmann/gose-6mo-imputation-production.git
cd gose-6mo-imputation-production cd gose-6mo-imputation-production
...@@ -21,7 +21,7 @@ provided script ...@@ -21,7 +21,7 @@ provided script
``` ```
This will download the `container.sif` file (~1Gb) in the current working This will download the `container.sif` file (~1Gb) in the current working
directory. directory.
An automated download script via the Neurobot-API is provided but require An automated download script via the Neurobot-API is provided but requires
that the Neurobot username and API token are available as environment variables that the Neurobot username and API token are available as environment variables
```bash ```bash
export NEUROBOT_USR=[your-neurobot-username] export NEUROBOT_USR=[your-neurobot-username]
......
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