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impute-gene-expression
impute-gene-expression
Commit 87dfc01d authored by Kevin Kunzmann's avatar Kevin Kunzmann Committed by GitHub
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...@@ -53,4 +53,9 @@ Cluster execution is enables via the `scripts/slurm_snakemake.sh` script as ...@@ -53,4 +53,9 @@ Cluster execution is enables via the `scripts/slurm_snakemake.sh` script as
bash scripts/slurm_snakemake.sh impute bash scripts/slurm_snakemake.sh impute
## Results
Intermediate files (PrediXcan dosage files and raw outputs) are stored in the `outputs/`
subfolder of the working directory.
The file `output/gene_expressions_combined.rds` combines imputed gene expression levels across
all available brain regions in a compressed .rds file (R data set).
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