Merge branch 'master' of https://git.center-tbi.eu/kunzmann/impute-gene-expression

README.md

@@ -48,7 +48,7 @@ for reference.
     Make sure the ckeck out the exact version of the pipeline you want to run,
     either by comit hash, or an available tag, e.g. via
     ```
-    git checkout v0.1.0
+    git checkout v0.3.0
     ```
 2.  Download the container image specified at the to of the `Snakefile`
     (singularity: ...) manually via, e.g. (make sure to adjust to the exact specification!)
@@ -86,7 +86,8 @@ for reference.
 
 ### Cluster execution
 
-1.  Same as the first step in 'Local execution'.
+1.  Same as the first step in 'Local execution', also make sure to checkout the
+    correct tag/commit.
 2.  Make sure that `Python 3` is available and `snakemake` installed 
     (e.g. load Python via modules and install snakemake into a virtual environment)
 3.  Configure snakemake for your execution environment and store the profile in, 
@@ -104,7 +105,7 @@ for reference.
 5.  Adjust tissues, data date, and target cohort in `config/parameters.yaml`
 6.  Run the distributed pipeline
     ```
-    snakemake --profile config/snakemake/my-cluster all
+    snakemake --profile config/my-cluster all
     ```