Bootstrap: docker

From: rocker/verse:latest



%labels

    Maintainer Kevin Kunzmann kevin.kunzmann@mrc-bsu.cam.ac.uk



%help

    CENTER-TBI 6 months GOSe outcome imputation,
    cf. https://git.center-tbi.eu/kunzmann/gose-6mo-imputation for details.



%post

    apt-get update

    apt-get -y install curl python3-pip
    pip3 install snakemake

    R -e "devtools::install_github('tidyverse/tidyr')"
    R -e "install.packages('diagram')"
    R -e "install.packages('caret')"
    R -e "install.packages('e1071')"
    R -e "install.packages('msm')"