Commit 326fb908 authored by Kevin's avatar Kevin

fixed issue with container

parent ddd3fd6f
...@@ -24,4 +24,8 @@ From: rocker/verse:latest ...@@ -24,4 +24,8 @@ From: rocker/verse:latest
apt-get -y install curl python3-pip apt-get -y install curl python3-pip
pip3 install snakemake pip3 install snakemake
R -e "devtools::install_github('tidyverse/tidyr')"
R -e "install.packages('diagram')"
R -e "install.packages('caret')"
R -e "install.packages('e1071')"
R -e "install.packages('msm')" R -e "install.packages('msm')"
#!/bin/bash
sudo singularity build container.sif container-recipe
File mode changed from 100644 to 100755
...@@ -2,11 +2,11 @@ ...@@ -2,11 +2,11 @@
set -e set -e
wget https://zenodo.org/record/2600385/files/container.sif wget https://zenodo.org/record/2641161/files/container.sif
checksum=($(md5sum container.sif)) checksum=($(md5sum container.sif))
if [ $checksum != 7db125c9c83621d78981e558546b1e88 ]; then if [ $checksum != 4d7edd4ff6ba7c8ff7639c53e7c6daf9 ]; then
echo md5 mismatch! echo md5 mismatch!
exit 1 exit 1
fi fi
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